Small RNA from different tissues of two rat strains.

miR-Intess™

miR classification

miR expression

block1906420_cand

block1906420_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block1906420_cand 3arm	1	0	0	0	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block1906420_cand 3arm	0.000	0	0	0	0	0	0	0	0	0

block1906420_cand relative cloning frequencies

block1906420 [novel_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.007	no	no	0.20/0.20	20/20/1.00	0.0	0.0	1	0	1	0	24	13	3arm	1	5	0.20	2	1	1	na	na

block1906420 hairpin

		reads	miRBase family seed
seed	------------------------------------------------------------------------------------------------AAAAUGU-------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1
	-----------------------------------------------------------------------------------------------TAAAATGTATTTCAGGTAAA-------------------------------------------	20	1
rat	-----------------TGATTTATTCCTGTATCACTTGTCTTACTTGAAACA--TTTTTAAAAACAAAGTGTTAAAGAGTATTTAAATGTTTGTTAAAATGTATTTCAGGTAAAGCAATGAAAAAATGGGTCGAATCC-------------------
mouse	TTTGAACTTTATAGCAATGGTTTATTCATGTATCACTTGTATTACTTTAAACATTTTTTTAAAAACAAAGTGTTAAAGAGTATTTAAATGTTTGTTAAAATGTATTTCAGGTAAAGCAATGAAAAAATGGGTCGAATCCATCACTAAGATAATCCAAA
	*** ******** ** * **********************************************************************************
	+++++ ++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>	ENSRNOT00000009359 ENSRNOG00000007106 NP_001094186.1
	+++++ ++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>	ENSRNOT00000061979 ENSRNOG00000007106 NP_001094186.1
rat	.(((((..(((....(((.(((..(((((((((((( ((((...(((((.....(((((.....))))).)))))...)))))))..)))))))))..))))))......)))..))))).	1.000 -28.60
mouse	...........(((..(((((((((((((...(((.((((.((((((.(((((((((......((((((...(((((.....)))))...)))))))))))))..)).)))))).)))))))....)))))).))).))))..)))............	0.901 -25.50

rat	chromosome:6:3334438:3334557:-1	Same_strand\|Boundary_coding\|ENSRNOT00000061979\|ENSRNOG00000007106 ## ENSRNOG00000007106\|protein_coding\|NP_001094186.1\|Son of sevenless homolog 1 [Source:RefSeq_peptide;Acc:NP_001094186]
mouse	chromosome:17:80819778:80819935:-1	Same_strand\|Boundary_coding\|ENSMUST00000068714\|ENSMUSG00000024241\|protein_coding\|Son of sevenless homolog 1 (Drosophila) Gene [Source:MGI Symbol;Acc:MGI:98354]

©2008 InteRNA Genomics B.V.