block190969_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block190969_cand 5arm | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block190969_cand 5arm | 0 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
block190969 [novel_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.58/0.58 | 24/24/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 14 | 1 | 5arm | 1 | nd | 0.21 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------CACUGAC---------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S2 | |||
| --------------CCACTGACCAGAGCCTAAGCTAGG------------------------------------------ | 24 | 1 | |
| rat | CTCATGATGCAAGGCCACTGACCAGAGCCTAAGCTAGGCCCCTGCTGCCTGCTTGGGCCTTCGTGCTAGCTCTTCATGAT | ||
| mouse | --------------CCACTGACCAGAACCTGAGGGAGGCCCCTTCTGCCTGCCTGGG----------------------- | ||
| ************ *** ** ******** ******** **** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000059227 ENSRNOG00000001457 Rfc2 | ||
| rat | .((((((.((..((.(((.((..((.((((((((.((((.......))))))))))))))))))))).))...)))))). | 0.720 -31.50 | |
| mouse | .............(((.(((.((((.......)))).)))))) | 0.737 -13.20 |
| rat | chromosome:12:23013249:23013328:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000001989|ENSRNOG00000001457 ## Same_strand|Intronic_non-coding|ENSRNOT00000059227|ENSRNOG00000001457 ## ENSRNOG00000001457|protein_coding|Rfc2|replication factor C 2 [Source:RefSeq_peptide;Acc:NP_446238] |
| mouse | chromosome:5:135237641:135237760:1 | intergenic |
©2008 InteRNA Genomics B.V.