miR-Intess: block193910

block193910_cand

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.005	no	no	0.46/0.46	24/24/1.00	0.0	0.0	1	0	1	0	25	10	5arm	1	9	0.25	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------UUUGUGC-----------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T5S1
	-------------------------CTTTGTGCTGGTTCTGAAGTTCTC-------------------------------------------------------------------------	24	1
rat	TGGCTTTGTGCCTTCTTTGTGCTGGCTTTGTGCTGGTTCTGAAGTTCTCGCCTTGCAGGAGGAAGAGCC-CTGTGAGAGCAGCAGCGAGGACGAGCACGGGACCAAGGGTTATCAGAGCCT-
human	-------------------------CTTTGTGCTGGTTCTGAA-------------AGGCAGAGTGGCCTCTCTGAGGGTCTCAGCACAGGT---CACAGGCTCAG----TACCAGCCACTG
	**************** * * ** * **** * * *
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>	ENSRNOT00000038092 ENSRNOG00000024352 NP_001100607.1
rat	.(((((((.(((((........(((..(((((((.(((((...(((((.((((..((((.........) )))..)).)))).))).))))).)))))))..))))))))...))))))).	0.970 -50.90
human	...((.((((((.((((. ..((...(((((((..(((((...)))))...)))) )))..)))))) .))))))))...	1.000 -32.60

rat	chromosome:12:27436680:27436799:-1	Same_strand\|Intronic_coding\|ENSRNOT00000038092\|ENSRNOG00000024352 ## ENSRNOG00000024352\|protein_coding\|NP_001100607.1\|radical S-adenosyl methionine and flavodoxin domains 1 [Source:RefSeq_peptide;Acc:NP_001100607] ## {Repeats: trf 1 9 0 class=trf,trf 1 12 0 class=trf}
human	chromosome:20:38834346:38834505:1	intergenic