miR-Intess: block1962453

block1962453_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block1962453_cand 3arm	6	8	3	0	1	3	3	0	2	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block1962453_cand 3arm	0.000	0.000	0.000	0	0.000	0.000	0.000	0	0.000	0

block1962453 [novel_cloningOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.078	no	no	0.73/0.84	18/23/0.81	0.0	1.0	26	0	7	0	16	5	3arm	1	nd	0.11	1	26	7	na	na

		reads	miRBase family seed
seed	-----------------------------------------------CCCCCCU-------------------------------	26	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T3S1	T3S2	T4S1	T5S1
	----------------------------------------------TCCCCCCTCAGCCGCGGGCAA------------------	21	3	2	3	1	-	1	-
	----------------------------------------------TCCCCCCTCAGCCGCGGGCA-------------------	20	2	2	-	-	1	-	1
	----------------------------------------------TCCCCCCTCAGCCGCGGGC--------------------	19	-	2	-	-	1	-	-
	----------------------------------------------TCCCCCCTCAGCCGCGGGCAAA-----------------	22	-	1	-	-	1	-	1
	----------------------------------------------TCCCCCCTCAGCCGCGGG---------------------	18	-	-	-	-	-	2	-
	----------------------------------------------TCCCCCCTCAGCCGCGGGCAAAC----------------	23	1	1	-	-	-	-	-
rat	tggcgacggccgagtctgcggcgggggaggagcgagcgagccgagcTCCCCCCTCAGCCGCGGGCAAACcgggccctgggcgccg
	*************************************************************************************
	-----------------------------------------------------------------------------------------------	ENSRNOT00000007583 ENSRNOG00000005513 Sfrs5
	-----------------------------------------------------------------------------------------------	ENSRNOT00000058290 ENSRNOG00000005513 Sfrs5
rat	.((((..((((..((((((((((((((.(((((...((...)).))))).))))).)))))))))......)))).....)))).	0.800 -49.80

rat

chromosome:6:104728724:104728808:-1

Opposite_strand|Intronic_non-coding|ENSRNOT00000007583|ENSRNOG00000005513 ## ENSRNOG00000005513|protein_coding|Sfrs5|Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing factor SRP40) (Insulin-induced growth response protein CL-4) (Delayed-early protein HRS). [Source:UniProtKB/Swiss-Prot;Acc:Q09167] ## {SimpF: oe = 0.92 -1 CpG}

miR-Intess™

block1962453_cand

block1962453 [novel_cloningOK]