miR-Intess: block1984233

block1984233_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block1984233_cand 3arm	15	19	0	0	0	0	3	3	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block1984233_cand 3arm	0.000	0.001	0	0	0	0	0.000	0.000	0	0

block1984233 [novel_cloningOK_mirtron]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.333	no	no	0.58/0.62	18/23/0.80	0.7	1.4	31	0	4	0	23	4	3arm	1	0	0.20	2	40	4	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------UCACCUG-------------------------------------	25	novel
seed	-----------------------------------------------------------------GCUCACC---------------------------------------	15	novel
		len	cloning frequencies
			T1S1	T1S2	T4S1	T4S2
	------------------------------------------------------------------CTCACCTGACCTCTCCTGCAG------------------------	21	4	6	-	-
	------------------------------------------------------------------CTCACCTGACCTCTCCTGCA-------------------------	20	-	5	1	-
	----------------------------------------------------------------AGCTCACCTGACCTCTCCT----------------------------	19	3	3	-	-
	------------------------------------------------------------------CTCACCTGACCTCTCCTGCAGA-----------------------	22	1	3	2	-
	----------------------------------------------------------------AGCTCACCTGACCTCTCCTG---------------------------	20	2	-	-	1
	----------------------------------------------------------------AGCTCACCTGACCTCTCCTGCA-------------------------	22	3	-	-	-
	------------------------------------------------------------------CTCACCTGACCTCTCCTGCAGAC----------------------	23	-	1	-	1
	------------------------------------------------------------------CTCACCTGACCTCTCCTG---------------------------	18	-	1	-	-
	----------------------------------------------------------------AGCTCACCTGACCTCTCCTGC--------------------------	21	1	-	-	-
	----------------------------------------------------------------AGCTCACCTGACCTCTCC-----------------------------	18	-	-	-	1
	----------------------------------------------------------------AGCTCACCTGACCTCTCCTGCAG------------------------	23	1	-	-	-
rat	CTGCCATGAGAGTGAGTGGTGCGCAGAGCGGGCGGGGTGGGGCAAGCTGGCCAGCCACGGGGACAGCTCACCTGACCTCTCCTGCAGACATCGACGACTGCATGGGTCAGC
mouse	-------------------------GAGTTGGTGGGGTGGGGCAAGCTGGCCAGCCACAGGGACAGCTCACCCATCCTCTCCCTCAGACATTGACGACTGC----------
	* *********************** ********* *** *** *******
	>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	ENSRNOT00000019213 ENSRNOG00000013927 Jag2
	>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	ENSRNOT00000019066 ENSRNOG00000013927 Jag2
rat	((((((((..(((...(((((......(((((.(((((.(((..(((((.((........)).)))))..))).))))).)))))...)))))...))).)))))..))).	0.870 -45.40
mouse	(((..((.((((((((...(((((.((........)).)))))..))))))))))..)))................	0.904 -28.90

rat	chromosome:6:137915518:137915628:-1	Same_strand\|Boundary_coding\|ENSRNOT00000019213\|ENSRNOG00000013927 ## ENSRNOG00000013927\|protein_coding\|Jag2\|Protein jagged-2 (Jagged2) (Fragment). [Source:UniProtKB/Swiss-Prot;Acc:P97607]
mouse	chromosome:12:114152247:114152322:-1	Same_strand\|Boundary_coding\|ENSMUST00000075827\|ENSMUSG00000002799\|protein_coding\|jagged 2 Gene [Source:MGI Symbol;Acc:MGI:1098270]

miR-Intess™

block1984233_cand

block1984233 [novel_cloningOK_mirtron]