miR-Intess: block1991355

block1991355_cand

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.007	no	no	0.47/0.50	18/19/0.00	0.0	0.0	37	0	10	0	19	8	3arm	1	nd	0.11	2	70	10	na	na

		reads	miRBase family seed
seed	----------------------------------------------------------------------------------AGGUCAU------------------------------	70	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	---------------------------------------------------------------------------------GAGGTCATTTCCCAGGAAT-------------------	19	3	2	4	2	3	3	7	18	6	6
	---------------------------------------------------------------------------------GAGGTCATTTCCCAGGAA--------------------	18	-	2	1	-	2	2	1	4	1	3
rat	GTGGAGATGTAATCTGCAAATACCTGAGTATTCCTGCAGGAAAGAGCCTCTAAAGGATAAAGAATCATGACT--TGTTCATGAGGTCATTTCCCAGGAATGCTTTGCAAAGCATACTGC
mouse	--------------------CCTCTCAGGACTCCTGCTTGGAA-----TC--------------TCATTACTGAGATTCCTCAGGTCATTTCCCAGGAAA-------------------
	* ****** * ** * *** * *****************
	----------------------------------------------------------------------------- --------------------------------------------------	ENSRNOT00000030853 ENSRNOG00000006523 Arl6ip2
	----------------------------------------------------------------------------- --------------------------------------------------	ENSRNOT00000008988 ENSRNOG00000006523 Arl6ip2
rat	((((..((((....((((.......(((((((((((..(((((..(((((....((((((...........) )))))..)))))..))))))))))))))))))))..)))).))))	0.770 -35.61
mouse	..(((..(((..((((...(((( (( (((....))))))))).)))).....)))..)))..	0.958 -22.30

rat	chromosome:6:2739209:2739325:1	Opposite_strand\|Intronic_coding\|ENSRNOT00000030853\|ENSRNOG00000006523 ## ENSRNOG00000006523\|protein_coding\|Arl6ip2\|Arl6ip2 protein (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q562A0]
mouse	chromosome:1:61363311:61363467:-1	intergenic