miR-Intess: block199412

block199412_cand

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.005	no	no	0.65/0.67	20/24/1.00	0.0 0.5	0.0 0.0	1 2	0 0	1 2	0 0	27 18	4 9	3arm 3arm	1 2	nd nd	0.15 0.17	2 2	3	3	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------CUGAGCU----------------------------------	1	novel
seed	--------------------------------------------------------------GGCUCCU---------------------------------------	1	novel
seed	--------------------------------------------------------------------UGAGCUC---------------------------------	1	novel
		len	cloning frequencies
			T1S2	T3S2	T5S2
	-------------------------------------------------------------------CTGAGCTCGGCTTCCAGCTCCTG------------------	23	1	-	-
	-------------------------------------------------------------AGGCTCCTGAGCTCGGCTTC---------------------------	20	-	-	1
	------------------------------------------------------------------CCTGAGCTCGGCTTCCAGCTCCTG------------------	24	-	1	-
rat	GTAATCTTTAAACTCAGGAGAAGAGGGGAGACCGATTCAGGAAACTGCAGAAGGTGGCTGGAGGCTCCTGAGCTCGGCTTCCAGCTCCTGCAAACGTTTTAGGCGGAC
mouse	------------------AGAAGAAGGGAAACGGAATCAGGAAACCACAGAAGGTGGCTGGTGGCTCCTGAGCTCGGCTTCCATCTCCT-------------------
	**** ***** ********** ***************** ***
rat	((...(((.((((.((((((.....(((((.(((((((((((..((.(((.......))).))..))))))).)))))))))..)))))).....)))).)))...))	0.540 -41.10
mouse	((.(((.((((..(((..((((((..((((...((....)).)))).))))))..)))..)))).))).))	0.996 -26.00

rat	chromosome:12:36805729:36805836:-1	intergenic
mouse	chromosome:5:121262305:121262452:-1	Same_strand\|Boundary_non-coding\|ENSMUST00000111858\|ENSMUSG00000001166\|protein_coding\|2'-5' oligoadenylate synthetase 1C Gene [Source:MGI (curated);Acc:Oas1c-001] ## {Repeats: dust 0 class=dust}