Small RNA from different tissues of two rat strains.

miR-Intess™

miR classification

miR expression

block19975_cand

block19975_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block19975_cand 5arm	0	0	0	0	0	0	0	0	1	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block19975_cand 5arm	0	0	0	0	0	0	0	0	0.000	0

block19975_cand relative cloning frequencies

block19975 [novel_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.008	no	no	0.65/0.65	20/20/1.00	0.0	0.0	1	0	1	0	25	1	5arm	1	nd	0.25	2	1	1	na	na

Families
Member of family novel92 (seed GGCCUUG): block19975_cand, block747878_cand

block19975 hairpin

		reads	miRBase family seed
seed	--------------------------GGCCUUG------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T5S1
	-------------------------TGGCCTTGTGGTGGCTCTCC------------------------------------------------------------	20	1
rat	CGACCAGCAGGGCCTCACTTGCCCTTGGCCTTGTGGTGGCTCTCCGTCTTCTTGGGCAGCAACACCGCCTGGATGTTGGGCAGGACGCCGCCCTGCGCGATGGTC
human	-------------------------TGGCCTTGTGGTGGCTCTCCGTCTTCTTGGGCAGCAGTACGGCCT-----------------------------------
mouse	----------------------CCTTGGCCTTGTGGTGGCTCTCGGTCTTCTTCGGCAGCAGTACGGCCTGG---------------------------------
	***************** **** *** ****
	-------------------------------------------------------------------------------------------------------------------	ENSRNOT00000033866 ENSRNOG00000022983 Trim17
	-------------------------------------------------------------------------------------------------------------------	ENSRNOT00000048642 ENSRNOG00000022983 Trim17
	-------------------------------------------------------------------------------------------------------------------	ENSRNOT00000033894 ENSRNOG00000022983 Trim17
	-------------------------------------------------------------------------------------------------------------------	ENSRNOT00000058453 ENSRNOG00000022983 Trim17
rat	.((((((((((((....(((((((....((..(((((((((.((((......)))).)))..))))))..)).....))))))).....)))))))....)))))	1.000 -51.80
human	.((((..(((.((.((.((((......)))).)))).))))))).	1.000 -16.00
mouse	((..((((..(((.((.((.((((......)))).)))).))))))).))	1.000 -16.10

rat	chromosome:10:45246207:45246311:-1	Opposite_strand\|Intronic_coding\|ENSRNOT00000058453\|ENSRNOG00000022983 ## Opposite_strand\|Boundary_non-coding\|ENSRNOT00000003885\|ENSRNOG00000022983 ## ENSRNOG00000022983\|protein_coding\|Trim17\|Tripartite motif-containing protein 17 (Testis RING finger protein). [Source:UniProtKB/Swiss-Prot;Acc:Q9WV59] ## {SimpF: oe = 0.70 -1 CpG}
human	chromosome:1:226711715:226711859:1	Opposite_strand\|Exonic_non-coding\|ENST00000366695\|ENSG00000181218\|protein_coding\|Histone H2A type 3 [Source:UniProtKB/Swiss-Prot;Acc:Q7L7L0] ## {SimpF: rank = 2 -1 FirstEF,rank = 3 -1 FirstEF,oe = 0.82 0 CpG,rank = 1 -1 FirstEF}
mouse	chromosome:13:21878703:21878752:1	Opposite_strand\|Exonic_coding\|ENSMUST00000091751\|ENSMUSG00000069309\|protein_coding\|histone cluster 1, H2an Gene [Source:MGI (curated);Acc:Hist1h2an-001] ## {SimpF: oe = 0.78 1 CpG}

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