block201608_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block201608_cand 5arm | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block201608_cand 5arm | 0 | 0 | 0.000 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 |
block201608 [novel_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.70/0.70 | 20/20/1.00 | 0.0 | 0.0 | 2 | 0 | 2 | 0 | 10 | 26 | 5arm | 1 | nd | 0.15 | 1 | 2 | 2 | na | na |
| Member of family novel4 (seed GGGGGUG): block198747_cand, block201608_cand, block582204_cand, block626161_cand, block1771496_cand, block1889441_cand, block1909946_cand, block1947181_cand, block2108821_cand, block2326461_cand, block2463895_cand, block2677915_cand |
| reads | miRBase family seed | |||
| seed | -----------GGGGGUG------------------------------------------------------------------------------------------------------ | 2 | novel | |
| len | cloning frequencies | |||
| T2S1 | T2S2 | |||
| ----------TGGGGGTGTTTGGGGGTGGG------------------------------------------------------------------------------------------ | 20 | 1 | 1 | |
| rat | agattgaagaTGGGGGTGTTTGGGGGTGGGatgcacacatctctttccaggcagttatcttacaagctacatctgggaggggggggtgtgtgccacccctgatttacctcagtccctgtc | |||
| ************************************************************************************************************************ | ||||
| ---------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000001507 ENSRNOG00000001141 RGD1560213_predicted | |||
| rat | .(((....(((.((((((.((((((((((.((((((...((((((((((((.((((........))))...))))))))))))..)))))).))))))))))..)))))).)))...))) | 1.000 -55.70 | ||
| rat | chromosome:12:41302207:41302326:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000001507|ENSRNOG00000001141 ## ENSRNOG00000001141|protein_coding|RGD1560213_predicted| |
©2008 InteRNA Genomics B.V.