block20227_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block20227_cand 3arm | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block20227_cand 3arm | 0 | 0 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
block20227 [novel_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.55/0.55 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 6 | 26 | 3arm | 1 | nd | 0.25 | 3 | 1 | 1 | na | na |
| Member of family miR-24 (seed GGCUCAG): block20227_cand, block790978_cand, block842526_cand, block1772000_cand, block2044801_cand |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------------------------------------------GGCUCAG------------------ | 1 | miR-24 |
| len | cloning frequencies | ||
| T2S1 | |||
| ------------------------------------------------------------------------------------------TGGCTCAGCTCAATAGGGAC------ | 20 | 1 | |
| rat | gccagagtctgttcgagctttttacaaggctgggcacattctcctggtctgagtagtagccctggctactacaaaggaggatggggcttgTGGCTCAGCTCAATAGGGACttcagc | ||
| ******************************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000050370 ENSRNOG00000022548 RGD1565729_predicted | ||
| rat | ((..(((((((((.(((((..(((((((.((.....(((((((((.......((((((((....))))))))..))))))))))).)))))))...))))))))..))))))..)) | 0.840 -46.90 |
| rat | chromosome:10:45691741:45691856:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000050370|ENSRNOG00000022548 ## ENSRNOG00000022548|protein_coding|RGD1565729_predicted| |
©2008 InteRNA Genomics B.V.