block202681_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block202681_cand 3arm | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block202681_cand 3arm | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.000 |
block202681 [novel_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.62/0.62 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 21 | 7 | 3arm | 1 | nd | 0.24 | 2 | 1 | 1 | na | na |
| Member of family novel95 (seed GCCAGCC): block45598_cand, block202681_cand |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------GCCAGCC---------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S2 | |||
| ----------------------------------------------------------------TGCCAGCCCTCAGCTCCATCT--------------------- | 21 | 1 | |
| rat | CCTGCTATCTGACCAAGTTGGGGTCAGGGGGTGGAGGGAACGGCACCTGGCCATGCATGGAAGCTGCCAGCCCTCAGCTCCATCTGCCTCAGGTAAGAAATCCAGG | ||
| human | CCACTGGGCTGACC----TGAGGCTCGTG----------------CATGGCCTTGCAC---CCCTGCCAGCCCCCAGCTCCATCAC-------------------- | ||
| ** ****** ** ** * * * ***** **** ********** ********** | |||
| -------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000001565 ENSRNOG00000001183 Tcf1 | ||
| rat | ((((...(((.(((....(((((.((((((((.(((((...((((.((..(((....))).)).))))..))))).)))))..))))))))))).)))....)))) | 0.990 -45.20 | |
| human | ....(((((((... ...(((..((( ((......))))) ....)))......)))).))).... | 0.950 -19.90 |
| rat | chromosome:12:42920522:42920627:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000001565|ENSRNOG00000001183 ## ENSRNOG00000001183|protein_coding|Tcf1|Hepatocyte nuclear factor 1-alpha (HNF-1A) (Liver-specific transcription factor LF-B1) (LFB1). [Source:UniProtKB/Swiss-Prot;Acc:P15257] |
| human | chromosome:4:2343483:2343628:-1 | Same_strand|Boundary_non-coding|ENST00000342540|ENSG00000159733|protein_coding|Zinc finger FYVE domain-containing protein 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9HCC9] ## Same_strand|Intronic_coding|ENST00000290974|ENSG00000159733|protein_coding|Zinc finger FYVE domain-containing protein 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9HCC9] |
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