logoSmall RNA from different tissues of two rat strains.


miR expression

block2031625_cand

block2031625_cand

Cloning frequencies
absoluteT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block2031625_cand 3arm0000000000.500
normalizedT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block2031625_cand 3arm0000000000.000
block2031625_cand relative cloning frequencies

block2031625 [novel_randfoldOK]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
no0.007nono0.71/0.7121/21/1.000.0
0.0
1
0
1
0
24
18
3arm
2
nd
0.24
3
11nana
Families
Member of family novel127 (seed CAGGCCC): block193858_cand, block2031625_cand
block2031625 hairpin
  readsmiRBase family seed
seed     --------------------------------------------------------------CAGGCCC-------------------------------------     1novel
  lencloning frequencies
   T5S2
      -------------------------------------------------------------ACAGGCCCTGGCTCCCTGCAG------------------------     211
rat     gtctattaaacttgtctgctagagctgggcctcctgctggggacacaggcattttatctccACAGGCCCTGGCTCCCTGCAGaaagctttccaaggtcataaagac      
      **********************************************************************************************************      
 --------------------------------------------------------------------------------------------------------------------ENSRNOT00000034342 ENSRNOG00000008931 Slc25a21
rat     ((((......(((((((((..(((((((((((((((.((....))))))..............)))))).)))))...)))))........)))).......))))     0.660 -37.15

ratchromosome:6:77298576:77298681:1Opposite_strand|Intronic_coding|ENSRNOT00000034342|ENSRNOG00000008931 ## ENSRNOG00000008931|protein_coding|Slc25a21|solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21 Gene [Source:MGI Symbol;Acc:MGI:2445059]


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