Small RNA from different tissues of two rat strains.

miR-Intess™

miR classification

miR expression

block205126_cand

block205126_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block205126_cand 3arm	0	0	0	0	0	0	0	0	1	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block205126_cand 3arm	0	0	0	0	0	0	0	0	0.000	0

block205126_cand relative cloning frequencies

block205126 [novel_mirtron_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.59/0.59	22/22/1.00	0.0	0.0	1	0	1	0	14	6	3arm	1	4	0.23	3	1	1	na	na

Families
Member of family novel16 (seed AGCCCCA): block205126_cand, block313902_cand, block1884890_cand, block1884888_cand, block1884889_cand

block205126 hairpin

		reads	miRBase family seed
seed	--------------------------------------------------AGCCCCA----------------------------	1	novel
		len	cloning frequencies
			T5S1
	-------------------------------------------------TAGCCCCACTGCCTGTGTCTCA--------------	22	1
rat	ctggcagggtaggcacaggggtgggggtggggtgtttgtttctggccctTAGCCCCACTGCCTGTGTCTCAtcagccttatcagc
	*************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>	ENSRNOT00000056729 ENSRNOG00000037480 Ddx51
rat	(((..(((((((((((((((((((((.(((((.(((.......)))))))).))))))).))))))))).....)))))..))).	1.000 -45.90

rat

chromosome:12:46157181:46157265:-1

Same_strand|Intronic_coding|ENSRNOT00000056729|ENSRNOG00000037480 ## ENSRNOG00000037480|protein_coding|Ddx51|DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 Gene [Source:MGI (curated);Acc:Ddx51-001]

©2008 InteRNA Genomics B.V.