miR-Intess: block2092182

block2092182_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block2092182_cand 3arm	5	7	1	0	2	0	0	2	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block2092182_cand 3arm	0.000	0.000	0.000	0	0.000	0	0	0.000	0	0

block2092182 [novel_lenNOK_cloningOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.61/0.65	18/21/0.41	0.0	1.0	17	0	5	0	23	5	3arm	1	nd	0.22	2	17	5	na	na

Families
Member of family novel73 (seed CCCUUGG): block340731_cand, block2092182_cand

		reads	miRBase family seed
seed	-----------------------------------------------------------------CCCUUGG------------------------------------	17	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T3S1	T4S2
	----------------------------------------------------------------TCCCTTGGGGGGAAAAGG--------------------------	18	2	3	1	1	1
	----------------------------------------------------------------TCCCTTGGGGGGAAAAGGGG------------------------	20	3	1	-	1	1
	----------------------------------------------------------------TCCCTTGGGGGGAAAAGGG-------------------------	19	-	2	-	-	-
	----------------------------------------------------------------TCCCTTGGGGGGAAAAGGGGA-----------------------	21	-	1	-	-	-
rat	tctgtaggtttcttttcttttctttcctttttttttggggggggtctgtgtatgtattttagagTCCCTTGGGGGGAAAAGGGGAgagagaaagagggaaggggagag
	************************************************************************************************************
	----------------------------------------------------------------------------------------------------------------------	ENSRNOT00000037918 ENSRNOG00000026866 Syn3
rat	(((.....((((((((..(((((..(((((((..((.((((((.((((...........)))).)))))).))..)))))))..)))))..)))))))).....))).	1.000 -42.10

rat

chromosome:7:19810645:19810752:-1

Opposite_strand|Intronic_coding|ENSRNOT00000037918|ENSRNOG00000026866 ## ENSRNOG00000026866|protein_coding|Syn3|Synapsin-3 (Synapsin III). [Source:UniProtKB/Swiss-Prot;Acc:O70441] ## {Repeats: dust 19810668 19810682 0 class=dust,CT-rich 3 114 -1 class=Low_complexity}

miR-Intess™

block2092182_cand

block2092182 [novel_lenNOK_cloningOK_randfoldOK]