Small RNA from different tissues of two rat strains.

miR-Intess™

miR classification

miR expression

block2096720_cand

block2096720_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block2096720_cand 5arm	82	72	5	13	43	43	9	34	5	8
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block2096720_cand 5arm	0.003	0.003	0.000	0.001	0.002	0.003	0.001	0.002	0.000	0.001

block2096720_cand relative cloning frequencies

block2096720 [novel_lenNOK_cloningHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.003	no	no	0.44/0.50	18/19/0.00	0.0	0.0	265	0	10	0	13	12	5arm	1	nd	0.11	1	314	10	na	na

Families
Member of family miR-34a/34c/449a (seed GGCAGUG): rno-mir-34c, rno-mir-34a, rno-mir-449a, block2096720_cand

block2096720 hairpin

		reads	miRBase family seed
seed	--------------GGCAGUG--------------------------------------------------------------------------------	313	miR-34a/34c/449a
seed	------------CUGGCAG----------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	-------------TGGCAGTGTCTTAGCTAT----------------------------------------------------------------------	18	80	70	4	11	42	41	9	32	5	8
	-------------TGGCAGTGTCTTAGCTATC---------------------------------------------------------------------	19	2	2	1	2	1	1	-	2	-	-
	-----------ACTGGCAGTGTCTTAGCT------------------------------------------------------------------------	18	-	-	-	-	-	1	-	-	-	-
rat	TTCTCTCAAAGACTGGCAGTGTCTTAGCTATC--TGTGTGCATAAACTAGGCATTGTGCATTGTAGCTGGGCATTGTACAGTGTGCTATTTATGGGATGAG
mouse	-------------TGGCAGTGTCTTAGCTATTTGTGTGTGTATAAACTAGGCATTGTGCATTGTAGCTGGCCA----------------------------
	**************** ** *************************
rat	.(((((((.((((((((((((((.(((((((. ...((((((((........)))))))).))))))))))))))).)))).......)).))))).)).	0.730 -32.01
mouse	.(((.......(((((((......((((((((........)))))))).)))))))))).	0.979 -14.91

rat	chromosome:7:25995737:25995835:-1	intergenic
mouse	chromosome:10:88743819:88743957:-1	intergenic

©2008 InteRNA Genomics B.V.