block2134913_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block2134913_cand 3arm | 5 | 1 | 27 | 1 | 2 | 1 | 1 | 3 | 2 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block2134913_cand 3arm | 0.000 | 0.000 | 0.001 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0 |
block2134913 [novel_cloningOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.521 | no | no | 0.61/0.70 | 18/23/0.70 | 0.0 | 1.9 | 27 | 0 | 9 | 0 | 5 | 11 | 3arm | 1 | nd | 0.22 | 3 | 43 | 9 | na | na |
| Member of family novel9 (seed GGGGGUU): block542833_cand, block608895_cand, block710221_cand, block981778_cand, block1202748_cand, block2051986_cand, block2134913_cand, block2460377_cand |
| reads | miRBase family seed | ||||||||||
| seed | -----------------------------------------------------------GGGGGUU-------------------- | 43 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | |||
| ----------------------------------------------------------TGGGGGTTTTTGGGGGTGGGGGG----- | 23 | - | - | 9 | - | 2 | - | 1 | 1 | 1 | |
| ----------------------------------------------------------TGGGGGTTTTTGGGGGTGGGGG------ | 22 | 2 | - | 6 | - | - | 1 | - | - | - | |
| ----------------------------------------------------------TGGGGGTTTTTGGGGGTGGGG------- | 21 | 1 | - | 4 | - | - | - | - | 1 | 1 | |
| ----------------------------------------------------------TGGGGGTTTTTGGGGGTG---------- | 18 | 1 | - | 4 | 1 | - | - | - | 1 | - | |
| ----------------------------------------------------------TGGGGGTTTTTGGGGGTGG--------- | 19 | 1 | 1 | 4 | - | - | - | - | - | - | |
| rat | tcctccgttttactctgcgatggctggtgcatttgaggttaccataatttaaatggttTGGGGGTTTTTGGGGGTGGGGGGatgga | ||||||||||
| ************************************************************************************** | |||||||||||
| rat | ((((((.(((((((((.(((..(((....((((((((..........)))))))).......)))..))))))))))))))).))) | 0.650 -19.70 | |||||||||
| rat | chromosome:7:87071780:87071865:-1 | intergenic ## {Repeats: dust 87071785 87071806 0 class=dust} |
©2008 InteRNA Genomics B.V.