Small RNA from different tissues of two rat strains.

miR-Intess™

miR classification

miR expression

block2150684_cand

block2150684_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block2150684_cand 3arm	0	1	0	0	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block2150684_cand 3arm	0	0.000	0	0	0	0	0	0	0	0

block2150684_cand relative cloning frequencies

block2150684 [novel_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.006	no	no	0.48/0.48	21/21/1.00	0.0	0.0	1	0	1	0	15	18	3arm	1	6	0.14	1	1	1	na	na

block2150684 hairpin

		reads	miRBase family seed
seed	------------------------------------------------------------------------------UCACUAC----------------------------	1	novel
		len	cloning frequencies
			T1S2
	-----------------------------------------------------------------------------CTCACTACTCACTTCCATCTC---------------	21	1
rat	gagcgggctcggaatgatgaggtgagcagtaccctcagggcaggcagtggctgtgctaggcccaggccactgcagacCTCACTACTCACTTCCATCTCctgcagagccagctc
	*****************************************************************************************************************
	>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>	ENSRNOT00000042642 ENSRNOG00000023781 Plec1
	>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>	ENSRNOT00000040762 ENSRNOG00000023781 Plec1
	>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>	ENSRNOT00000006311 ENSRNOG00000023781 Plec1
	>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>	ENSRNOT00000047323 ENSRNOG00000023781 Plec1
	>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>	ENSRNOT00000043986 ENSRNOG00000023781 Plec1
	>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>	ENSRNOT00000044731 ENSRNOG00000023781 Plec1
	>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>	ENSRNOT00000041768 ENSRNOG00000023781 Plec1
	>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>	ENSRNOT00000043051 ENSRNOG00000023781 Plec1
	>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>	ENSRNOT00000045208 ENSRNOG00000023781 Plec1
	>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>	ENSRNOT00000045149 ENSRNOG00000023781 Plec1
rat	((((.((((((((..(((((((((((.(((......(((....(((((((((..((...))...)))))))))...))).))).)))))))).))))))....))))).))))	0.430 -51.70

rat

chromosome:7:114220349:114220461:-1

Same_strand|Intronic_coding|ENSRNOT00000042642|ENSRNOG00000023781 ## ENSRNOG00000023781|protein_coding|Plec1|Plectin-1 (PLTN) (PCN). [Source:UniProtKB/Swiss-Prot;Acc:P30427]

©2008 InteRNA Genomics B.V.