logoSmall RNA from different tissues of two rat strains.


miR expression

block2151888_cand

block2151888_cand

Cloning frequencies
absoluteT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block2151888_cand 5arm0001000000
normalizedT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block2151888_cand 5arm0000.000000000
block2151888_cand relative cloning frequencies

block2151888 [novel_randfoldOK]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
no0.007nono0.41/0.4122/22/1.000.0
0.0
1
0
1
0
32
3
5arm
1
nd
0.18
2
11nana
block2151888 hairpin
  readsmiRBase family seed
seed     ---------------------------------AUCUAAU------------------------------------------------------------------------------     1novel
  lencloning frequencies
   T2S2
      --------------------------------TATCTAATCCATCGCAGATGAG----------------------------------------------------------------     221
rat     ggagcaggcagcttacatggctaaggtttcatTATCTAATCCATCGCAGATGAGcttgaataagtccattggccgatgctgatctagttaggagggtagtgtaaagctgcttgagcca      
      **********************************************************************************************************************      
 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ENSRNOT00000056270 ENSRNOG00000004688 Rbm9_predicted
 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ENSRNOT00000033626 ENSRNOG00000004688 Rbm9_predicted
rat     ((..((((((((((((((.(((.....(((.(((.((((((((((((.((((..(((....)))..)))).)).))))..))).))).))))))))).)))))).))))))))..)).     0.500 -40.20

ratchromosome:7:115378146:115378263:-1Same_strand|Boundary_non-coding|ENSRNOT00000006398|ENSRNOG00000004688 ## Same_strand|Intronic_coding|ENSRNOT00000056270|ENSRNOG00000004688 ## ENSRNOG00000004688|protein_coding|Rbm9_predicted|RNA binding motif protein 9 [Source:RefSeq_peptide;Acc:NP_001073364]


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