block215202_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block215202_cand 3arm | 3 | 0 | 0 | 0 | 4 | 2 | 0 | 2 | 3 | 2 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block215202_cand 3arm | 0.000 | 0 | 0 | 0 | 0.000 | 0.000 | 0 | 0.000 | 0.000 | 0.000 |
block215202 [novel_cloningOK_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.61/0.70 | 18/23/0.75 | 0.0 2.4 | 0.0 4.1 | 1 15 | 0 0 | 1 6 | 0 0 | 41 29 | -2 2 | 3arm_loop 3arm | 1 1 | nd nd | 0.22 0.15 | 1 1 | 16 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | -------------------------------------------------------------AGCUCCC-------------------------------------------- | 8 | novel | |||||
| seed | ------------------------------------------------------------AAGCUCC--------------------------------------------- | 6 | novel | |||||
| seed | ----------------------------------------------------------GCAAGCU----------------------------------------------- | 1 | novel | |||||
| seed | ------------------------------------------------------GGCAGCA--------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T3S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------------------------------------AAGCTCCCCTACAGCCGCCAG------------------------------- | 21 | 1 | 1 | - | 1 | - | - | |
| ------------------------------------------------------------AAGCTCCCCTACAGCCGCCA-------------------------------- | 20 | 1 | - | - | - | 1 | - | |
| ------------------------------------------------------------AAGCTCCCCTACAGCCGCCAGCC----------------------------- | 23 | - | - | 1 | - | - | 1 | |
| -----------------------------------------------------------CAAGCTCCCCTACAGCCGCCAG------------------------------- | 22 | - | 1 | 1 | - | - | - | |
| -----------------------------------------------------------CAAGCTCCCCTACAGCCGCC--------------------------------- | 20 | - | 1 | - | - | 1 | - | |
| -----------------------------------------------------------CAAGCTCCCCTACAGCCGCCA-------------------------------- | 21 | - | - | - | - | 1 | - | |
| ------------------------------------------------------------AAGCTCCCCTACAGCCGCC--------------------------------- | 19 | 1 | - | - | - | - | - | |
| -----------------------------------------------------AGGCAGCAAGCTCCCCTA----------------------------------------- | 18 | - | 1 | - | - | - | - | |
| -----------------------------------------------------------CAAGCTCCCCTACAGCCG----------------------------------- | 18 | - | - | - | - | - | 1 | |
| ---------------------------------------------------------AGCAAGCTCCCCTACAGCC------------------------------------ | 19 | - | - | - | 1 | - | - | |
| rat | accctggcattgcagagtgcaaccctagggcgggtggggggtgctcgctgcagAGGCAGCAAGCTCCCCTACAGCCGCCAGCCttcactttgcttttgcgcacaaaagggtc | |||||||
| **************************************************************************************************************** | ||||||||
| -------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000001682 ENSRNOG00000001250 Lfng | |||||||
| rat | (((((.(((..((((((((.((..((..(((((.(((((((.(((.(((((....))))).))).))))).)).)))))))..))))))))))...))).......))))). | 0.980 -56.70 | ||||||
| rat | chromosome:12:14502315:14502426:1 | Opposite_strand|Intronic_coding|ENSRNOT00000001682|ENSRNOG00000001250 ## ENSRNOG00000001250|protein_coding|Lfng|Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe (EC 2.4.1.222) (O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase). [Source:UniProtKB/Swiss-Prot;Acc:Q924T4] |
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