Small RNA from different tissues of two rat strains.

miR-Intess™

miR classification

miR expression

block227196_cand

block227196_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block227196_cand 5arm	0	2	0	0	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block227196_cand 5arm	0	0.000	0	0	0	0	0	0	0	0

block227196_cand relative cloning frequencies

block227196 [novel_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.005	no	no	0.60/0.60	20/20/1.00	0.0	0.0	2	0	1	0	24	5	5arm	1	nd	0.20	2	2	1	na	na

Families
Member of family novel207 (seed AGGGGUU): block227196_cand, block1329157_cand

block227196 hairpin

		reads	miRBase family seed
seed	-------------------------AGGGGUU------------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			T1S2
	------------------------TAGGGGTTGGGGGTTACCAG------------------------------------------------------------------------	20	2
rat	TTCAGAATGGTCAGCCTCACCTCCTAGGGGTTGGGGGTTACCAGGGGAAACAGAATTCCCTAAAGGTGGAGCCAGGACCTCTGGAGTCACGTGGCGGTAGAGACTCAGCTCTGAGA
mouse	-----------------------CTAGGGGTTGGGGGTCACCAGGGGAAACAGAATTCCCTAAAGGTGGAGCCAGGACCTCTGGAGTCAC--------------------------
	************* *************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000001334 ENSRNOG00000001004 NM_001108334.1
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000031011 ENSRNOG00000001004 NM_001108334.1
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000003126 ENSRNOG00000001004 NM_001108334.1
rat	((((((.(((((.(((((((((((.(((((((..((.(((((.((((((......))))))...)))))..))..)))))))))))....)))).)))...))).))..)))))).	0.970 -47.30
mouse	(((((((((..((.(((((.((((((......))))))...)))))..))..)))))))))......	1.000 -30.60

rat	chromosome:12:32647847:32647962:1	Same_strand\|Intronic_coding\|ENSRNOT00000003126\|ENSRNOG00000001004 ## ENSRNOG00000001004\|protein_coding\|NM_001108334.1\|nuclear receptor co-repressor 2 (predicted) (Ncor2_predicted), mRNA [Source:RefSeq_dna;Acc:NM_001108334]
mouse	chromosome:5:125574965:125575031:-1	Same_strand\|Intronic_coding\|ENSMUST00000111402\|ENSMUSG00000029478\|protein_coding\|nuclear receptor co-repressor 2 Gene [Source:MGI (curated);Acc:Ncor2-002]

©2008 InteRNA Genomics B.V.