Small RNA from different tissues of two rat strains.

miR-Intess™

miR classification

miR expression

block2273852_cand

block2273852_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block2273852_cand 5arm	0.500	0	0	0	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block2273852_cand 5arm	0.000	0	0	0	0	0	0	0	0	0

block2273852_cand relative cloning frequencies

block2273852 [novel_mirtron_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.40/0.40	20/20/1.00	0.0	0.0	1	0	1	0	16	2	5arm	2	1	0.10	1	1	1	na	na

Families
Member of family novel47 (seed UGGGUGG): block2273852_cand, block2951454_cand, sblock6130_cand

block2273852 hairpin

		reads	miRBase family seed
seed	-----------------UGGGUGG---------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1
	----------------GTGGGTGGAATAGTATAACA---------------------------------------------	20	1
rat	AGGGTTCCTCATTAAGGTGGGTGGAATAGTATAACAATAGAACATGCATTGTTATAGTATTCCACCTTCCCTGATGTCCCT
human	-GGGTTCCTCATTAAGGTGGGTGGAATAGTATAACAATATAACATGTGTTGTTATAGTATTCCACCTTCCCTGATGTGCCT
mouse	---------CATTAAGGTGGGTGGAATAGTATAACAATAGATCATGCATTGTTATAGTATTCCACCTTCCCTGATG-----
	****************************** * ** **************************
	>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000009542 ENSRNOG00000006957 Gria4
	>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000009514 ENSRNOG00000006957 Gria4
rat	((((.....(((((.((.((((((((((.(((((((((.........))))))))).)))))))))).)).))))).))))	1.000 -36.10
human	((((....(((((.((.((((((((((.(((((((((((.....))))))))))).)))))))))).)).))))).))))	1.000 -39.00
mouse	(((((.((.((((((((((.(((((((((.........))))))))).)))))))))).)).)))))	1.000 -30.50

rat	chromosome:8:994815:994895:-1	Same_strand\|Boundary_coding\|ENSRNOT00000009514\|ENSRNOG00000006957 ## ENSRNOG00000006957\|protein_coding\|Gria4\|Glutamate receptor 4 precursor (GluR-4) (GluR4) (GluR-D) (Glutamate receptor ionotropic, AMPA 4) (AMPA-selective glutamate receptor 4). [Source:UniProtKB/Swiss-Prot;Acc:P19493]
human	chromosome:11:105309891:105309970:1	Same_strand\|Boundary_coding\|ENST00000282499\|ENSG00000152578\|protein_coding\|Glutamate receptor 4 Precursor (GluR-4)(GluR4)(GluR-D)(Glutamate receptor ionotropic, AMPA 4)(AMPA-selective glutamate receptor 4) [Source:UniProtKB/Swiss-Prot;Acc:P48058] ## Same_strand\|Boundary_non-coding\|ENST00000393125\|ENSG00000152578\|protein_coding\|Glutamate receptor 4 Precursor (GluR-4)(GluR4)(GluR-D)(Glutamate receptor ionotropic, AMPA 4)(AMPA-selective glutamate receptor 4) [Source:UniProtKB/Swiss-Prot;Acc:P48058]
mouse	chromosome:9:4455945:4456011:-1	Same_strand\|Boundary_coding\|ENSMUST00000027020\|ENSMUSG00000025892\|protein_coding\|glutamate receptor, ionotropic, AMPA4 (alpha 4) Gene [Source:MGI Symbol;Acc:MGI:95811]

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