block228766_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block228766_cand 3arm | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block228766_cand 3arm | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
block228766 [novel_shortStem_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.57/0.57 | 23/23/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 3 | 5 | 3arm | 1 | 4 | 0.17 | 2 | 1 | 1 | na | na |
| Member of family novel236 (seed CAGCUUC): sblock508_novel, block228766_cand |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------CAGCUUC------------------ | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| ------------------------------------------------ACAGCTTCTCCCTTCTCTTCCCC--- | 23 | 1 | |
| rat | gtggggtaggtgaggaggcgggaggtggattcactgtgcctcgagatgACAGCTTCTCCCTTCTCTTCCCCaca | ||
| ************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>> | ENSRNOT00000001773 ENSRNOG00000001309 Camkk2 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>> | ENSRNOT00000001774 ENSRNOG00000001309 Camkk2 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>> | ENSRNOT00000041200 ENSRNOG00000001309 Camkk2 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>> | ENSRNOT00000001778 ENSRNOG00000001309 Camkk2 | ||
| rat | ((((((.....(((((((.(((((((....(((((........)).)))..))))))))))))))..)))))). | 0.940 -33.80 |
| rat | chromosome:12:34923482:34923555:1 | Same_strand|Intronic_coding|ENSRNOT00000001774|ENSRNOG00000001309 ## ENSRNOG00000001309|protein_coding|Camkk2|Calcium/calmodulin-dependent protein kinase kinase 2 (EC 2.7.11.17) (Calcium/calmodulin-dependent protein kinase kinase beta) (CaM-kinase kinase beta) (CaM-KK beta) (CaMKK beta). [Source:UniProtKB/Swiss-Prot;Acc:O88831] |
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