logoSmall RNA from different tissues of two rat strains.


miR expression

block228842_cand

block228842_cand

Cloning frequencies
absoluteT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block228842_cand 5arm0000002000
normalizedT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block228842_cand 5arm0000000.000000
block228842_cand relative cloning frequencies

block228842 [novel_randfoldOK]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
no0.003nono0.74/0.7423/23/1.000.0
0.0
2
0
1
0
25
8
5arm
1
nd
0.22
2
21nana
block228842 hairpin
  readsmiRBase family seed
seed     --------------------------GCAGGGA-------------------------------------------------------------------------------------     2novel
  lencloning frequencies
   T4S1
      -------------------------GGCAGGGAGGTGGGGCACTGGGA----------------------------------------------------------------------     232
rat     ccagtgacggtgttcactaagttggGGCAGGGAGGTGGGGCACTGGGAtgcctggcactacggcaagcatccaggtgagacccatgaccctggacctaggatggagctccgatgatgg      
      **********************************************************************************************************************      
 --------------------------------------------------------------------------------------------------------------------------------ENSRNOT00000001746 ENSRNOG00000001296 P2rx7
rat     (((....(((.((((......(((((.(((((..(((((.((((.((((((...((......))..)))))).))))...)))))..)))))..)))))....)))).)))....)))     0.990 -52.80

ratchromosome:12:35088270:35088387:1Opposite_strand|Intronic_coding|ENSRNOT00000001746|ENSRNOG00000001296 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000057575|ENSRNOG00000001296 ## ENSRNOG00000001296|protein_coding|P2rx7|P2X purinoceptor 7 (ATP receptor) (P2X7) (Purinergic receptor) (P2Z receptor). [Source:UniProtKB/Swiss-Prot;Acc:Q64663]


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