miR-Intess: block2305240

block2305240_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block2305240_cand 3arm	8	14	1	0	2	1	3	2	3	1
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block2305240_cand 3arm	0.000	0.001	0.000	0	0.000	0.000	0.000	0.000	0.000	0.000

block2305240 [novel_cloningOK_mirtron]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.093	no	no	0.55/0.67	18/23/0.91	0.4	0.6	21	0	9	0	15	2	3arm	1	0	0.09	1	35	9	na	na

Families
Member of family novel77 (seed CUGACCC): block6619_cand, block2305240_cand

		reads	miRBase family seed
seed	-----------------------------------------------------------------UGACCCU-----------------------------	16	novel
seed	----------------------------------------------------------------CUGACCC------------------------------	11	novel
seed	------------------------------------------------------------------GACCCUC----------------------------	8	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	----------------------------------------------------------------CTGACCCTCCATCCACCCTTAG---------------	22	-	5	-	-	-	1	1	3	-
	-----------------------------------------------------------------TGACCCTCCATCCACCCTTAG---------------	21	2	-	-	-	-	2	-	-	1
	---------------------------------------------------------------TCTGACCCTCCATCCACCCTTA----------------	22	1	2	-	-	-	-	1	-	-
	---------------------------------------------------------------TCTGACCCTCCATCCACCCTTAG---------------	23	1	-	-	2	-	-	-	-	-
	----------------------------------------------------------------CTGACCCTCCATCCACCCTTA----------------	21	-	3	-	-	-	-	-	-	-
	-----------------------------------------------------------------TGACCCTCCATCCACCCTTA----------------	20	1	-	-	-	1	-	-	-	-
	----------------------------------------------------------------CTGACCCTCCATCCACCC-------------------	18	-	2	-	-	-	-	-	-	-
	---------------------------------------------------------------TCTGACCCTCCATCCACCCT------------------	20	1	1	-	-	-	-	-	-	-
	---------------------------------------------------------------TCTGACCCTCCATCCACCCTT-----------------	21	1	1	-	-	-	-	-	-	-
	-----------------------------------------------------------------TGACCCTCCATCCACCCTT-----------------	19	-	-	1	-	-	-	-	-	-
	----------------------------------------------------------------CTGACCCTCCATCCACCCTT-----------------	20	1	-	-	-	-	-	-	-	-
rat	gatgtgcctggcctgagggcagaggggatggatggtagagcagacagcccctcctctccagtgTCTGACCCTCCATCCACCCTTAGgttttattgacgttg
	*****************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>	ENSRNOT00000024240 ENSRNOG00000017871 NP_001101612.1
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>	ENSRNOT00000035310 ENSRNOG00000017871 NP_001101612.1
rat	(((((....((((((((((......(((((((.(((....((((((...............))))))))).))))))).))))))))))......))))).	0.880 -37.16

rat

chromosome:8:48911061:48911161:-1

miR-Intess™

block2305240_cand

block2305240 [novel_cloningOK_mirtron]