logoSmall RNA from different tissues of two rat strains.


miR expression

block230765_cand

block230765_cand

Cloning frequencies
absoluteT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block230765_cand 3arm6113316062
normalizedT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block230765_cand 3arm0.0000.0000.0000.0000.0000.0000.00000.0000.000
block230765_cand relative cloning frequencies

block230765 [novel_lenNOK_cloningOK_randfoldOK]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
no0.002nono0.53/0.5618/19/0.000.0
0.0
25
0
9
0
12
5
3arm
1
nd
0.22
2
299nana
block230765 hairpin
  readsmiRBase family seed
seed------------------------------------------------------CAGAGGC----------------------29novel
  lencloning frequencies
   T1S1T1S2T2S1T2S2T3S1T3S2T4S1T5S1T5S2
 -----------------------------------------------------GCAGAGGCTATTGTTCCC------------186-1331652
 -----------------------------------------------------GCAGAGGCTATTGTTCCCA-----------19-1-----1-
ratgcagaattgccttggtgaattgaaaacggctttcactgtcttcattccaggcaGCAGAGGCTATTGTTCCCaaggtctctgct 
 *********************************************************************************** 
rat(((((...(((((((.((((....((..(((((..((((((.......))))))..)))))..))))))))))))).))))).1.000 -33.20

ratchromosome:12:38314935:38315017:1intergenic


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