logoSmall RNA from different tissues of two rat strains.


miR expression

block2319523_cand

block2319523_cand

Cloning frequencies
absoluteT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block2319523_cand 3arm0000000.500050
normalizedT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block2319523_cand 3arm0000000.00000.0000
block2319523_cand relative cloning frequencies

block2319523 [novel_lenNOK_cloningOK_randfoldOK]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
no0.001nono0.47/0.4719/19/0.000.0
0.0
10
0
2
0
25
17
3arm
2
nd
0.11
1
112nana
block2319523 hairpin
  readsmiRBase family seed
seed     ---------------------------------------------------------------------GCAUUUU------------------------------------     11novel
  lencloning frequencies
   T4S1T5S1
      --------------------------------------------------------------------TGCATTTTGGTGTCTGGTC-------------------------     19110
rat     cagtggaatgggtagataagacaccagatgtggtgtcactctgagggctggctatgagggtggcctttTGCATTTTGGTGTCTGGTCttaacttgcaccttcccttctgctg      
      ****************************************************************************************************************      
 --------------------------------------------------------------------------------------------------------------------------ENSRNOT00000008971 ENSRNOG00000006723 NP_001101626.1
rat     (((..(((.(((.((((.(((((((((((((((.((((((((...((....))...))))))))...)))))))).))))))).)))).............))))))..)))     0.930 -44.14

ratchromosome:8:66865941:66866052:-1Opposite_strand|Intronic_coding|ENSRNOT00000008971|ENSRNOG00000006723 ## ENSRNOG00000006723|protein_coding|NP_001101626.1|integrin, alpha 11 [Source:RefSeq_peptide;Acc:NP_001101626]


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