miR-Intess: block2341689

block2341689_cand

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.006	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	26	0	5arm	1	nd	0.19	2	1	1	na	na

		reads	miRBase family seed
seed	---------------------------UCACCUU------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1
	--------------------------CTCACCTTCTTTCCCTACTTT-----------------------------------------------------------------	21	1
rat	GTCATTTTTCTCTCCTACAGCTTTCCCTCACCTTCTTTCCCTACTTTATTTTTCTAATTCAAGGTGGATGGAGGAAGGTGGATAGCGAATGTACTAGGGATAGGGATGTACT
mouse	----------------ACAGCTTTCTCTCACCTTCTTTCCCTACTTTATTTTTCTAATTCAAGGTGGATGGAGGAAGGTG--------------------------------
	******* ****************************************************
	--------------------------------------------------------------------------------------------------------------------------	ENSRNOT00000036149 ENSRNOG00000014025 RGRF1_RAT
rat	(((((((((((((..(((((((.(((...((((((((((.(((((((.............)))))))..))))))))))))).)))...))))..)))))..)))))).)).	1.000 -34.12
mouse	............(((((((((((.(((((((.............)))))))..)))))))))))	0.987 -18.82

rat	chromosome:8:94801843:94801954:-1	Opposite_strand\|Boundary_non-coding\|ENSRNOT00000018794\|ENSRNOG00000014025 ## Opposite_strand\|Intronic_non-coding\|ENSRNOT00000036149\|ENSRNOG00000014025 ## ENSRNOG00000014025\|protein_coding\|RGRF1_RAT\|Ras-specific guanine nucleotide-releasing factor 1 (Ras-GRF1) (Guanine nucleotide-releasing protein) (GNRP) (P140 Ras-GRF). [Source:UniProtKB/Swiss-Prot;Acc:P28818] ## {SimpF: oe = 0.78 -1 CpG}
mouse	chromosome:9:89804008:89804071:-1	intergenic ## {SimpF: oe = 0.75 -1 CpG}