miR-Intess: block234197

block234197_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block234197_cand 3arm	0	0	0.500	0	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block234197_cand 3arm	0	0	0.000	0	0	0	0	0	0	0

block234197 [novel_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.50/0.50	20/20/1.00	0.0	0.0	1	0	1	0	17	20	3arm	2	nd	0.30	2	1	1	na	na

Families
Member of family novel165 (seed CCUCACA): block39076_cand, block234197_cand

		reads	miRBase family seed
seed	----------------------------------------------------------------------------------CCUCACA-----------------------------	1	novel
		len	cloning frequencies
			T2S1
	---------------------------------------------------------------------------------ACCTCACACACACGTGTGTA-----------------	20	1
rat	cctcacacacacgtgtgtaggtgtgtgtctgtggagggccacctcacacacacatgtgtaggtgtgtgtctgtggagggccACCTCACACACACGTGTGTAggtgtgttgtctggggc
	**********************************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------------------	ENSRNOT00000030891 ENSRNOG00000028556 NP_001100623.1
rat	(((((.((((((.((..((.((((((((....((.((.((.((.((.((((((((......)))))))).)).)).)).)).))..)))))))).))..)).))))))....))))).	0.890 -58.10

rat

chromosome:12:43555538:43555655:1

Opposite_strand|Intronic_coding|ENSRNOT00000030891|ENSRNOG00000028556 ## ENSRNOG00000028556|protein_coding|NP_001100623.1|ubiquitin specific protease 30 [Source:RefSeq_peptide;Acc:NP_001100623] ## {Repeats: dust 43555641 43555645 0 class=dust,trf 96 116 0 class=trf}

miR-Intess™

block234197_cand

block234197 [novel_randfoldOK]