logoSmall RNA from different tissues of two rat strains.


miR expression

block2358678_cand

block2358678_cand

Cloning frequencies
absoluteT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block2358678_cand 3arm0000000001
normalizedT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block2358678_cand 3arm0000000000.000
block2358678_cand relative cloning frequencies

block2358678 [novel_randfoldOK]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
no0.001nono0.70/0.7020/20/1.000.0
0.0
1
0
1
0
10
10
3arm
1
nd
0.30
2
11nana
Families
Member of family novel191 (seed CCACCCC): block71535_cand, block2358678_cand
block2358678 hairpin
  readsmiRBase family seed
seed     ---------------------------------------------------------------CCACCCC----------------------     1novel
  lencloning frequencies
   T5S2
      --------------------------------------------------------------CCCACCCCTCTCCCCTCACT----------     201
rat     ctgtcaatatgtgggaagagtgggggggagggtaagaaagaaagaagctggaaggttctgctCCCACCCCTCTCCCCTCACTccttgacaga      
      ********************************************************************************************      
 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ENSRNOT00000056047 ENSRNOG00000008865 Stac_predicted
rat     (((((((...(((((..(((.(((((((((............((((.((...)).)))).))))).)))).)))..)))))...))))))).     0.990 -40.02

ratchromosome:8:115907581:115907672:-1Same_strand|Intronic_coding|ENSRNOT00000056047|ENSRNOG00000008865 ## Same_strand|Boundary_non-coding|ENSRNOT00000011780|ENSRNOG00000008865 ## ENSRNOG00000008865|protein_coding|Stac_predicted|


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