miR-Intess: block2475568

block2475568_cand

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.73/0.73	22/22/1.00	0.0	0.0	2	0	1	0	18	3	5arm	1	nd	0.18	2	2	1	na	na

		reads	miRBase family seed
seed	-------------------CCCUUCC--------------------------------------------------------------------	2	novel
		len	cloning frequencies
			T1S1
	------------------ACCCTTCCCCCCCAACCCCACC------------------------------------------------------	22	2
rat	GACTTCTGAGCACTCTTCACCCTTCCCCCCCAACCCCACCCCACATTGGCTGGGG--CGGGGGGGGGGGGAAGGTTTTTACAGACTTCGGGGGT
human	------------------ACCCTTCCCCCCCAACACCACCCCCCATAAAATGAGAGCTGGGGAGGAGGGGCAGG-------AGGC----AGGGA
	************** *** * ** * ** ** * ** * ***
	------------------------------------------------------------ ------------------------------------------	ENSRNOT00000061014 ENSRNOG00000020193 RUNX2_RAT
	------------------------------------------------------------ ------------------------------------------	ENSRNOT00000061013 ENSRNOG00000020193 RUNX2_RAT
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000061010 ENSRNOG00000039768 AC165141.4
rat	.((..(((((..((......(((((((((((..((((.(((((.......))))) .)))).))))))))))).......))..)))))..))	0.980 -51.82
human	.((((.((.((......((.(((((((............))))).)).))....)) .)). )))).	1.000 -24.40

rat	chromosome:9:11869107:11869198:-1	Opposite_strand\|Boundary_non-coding\|ENSRNOT00000061012\|ENSRNOG00000020193 ## Opposite_strand\|Intronic_coding\|ENSRNOT00000061014\|ENSRNOG00000020193 ## Same_strand\|Intronic_coding\|ENSRNOT00000061010\|ENSRNOG00000039768 ## ENSRNOG00000020193\|protein_coding\|RUNX2_RAT\|Runt-related transcription factor 2 (Core-binding factor, alpha 1 subunit) (CBF-alpha 1) (Osteoblast-specific transcription factor 2) (OSF-2) (Fragments). [Source:UniProtKB/Swiss-Prot;Acc:Q9Z2J9] ## ENSRNOG00000039768\|protein_coding\|AC165141.4\|Putative uncharacterized protein Fragment [Source:UniProtKB/TrEMBL;Acc:Q3TXX5] ## {Repeats: dust 11869159 11869174 0 class=dust}
human	chromosome:9:134688268:134688399:1	Opposite_strand\|Intronic_coding\|ENST00000298545\|ENSG00000165695\|protein_coding\|Putative adenylate kinase-like protein C9orf98 (EC 2.7.4.3) [Source:UniProtKB/Swiss-Prot;Acc:Q96MA6]