block24854_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block24854_cand 3arm | 10 | 12 | 15 | 16 | 78 | 42 | 1 | 0 | 24 | 22 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block24854_cand 3arm | 0.000 | 0.001 | 0.001 | 0.001 | 0.004 | 0.003 | 0.000 | 0 | 0.002 | 0.001 |
block24854 [novel_cloningHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.141 | no | no | 0.37/0.50 | 18/24/0.90 | 0.0 0.0 | 0.7 0.0 | 96 1 | 0 0 | 9 1 | 0 0 | 9 5 | 18 28 | 3arm 3arm | 1 1 | 73 83 | 0.23 0.22 | 2 2 | 220 | 9 | na | na |
| reads | miRBase family seed | ||||||||||
| seed | -----------------------------------------------------------------------------------CCAUAUG------------------------- | 175 | novel | ||||||||
| seed | ------------------------------------------------------------------------------------CAUAUGA------------------------ | 44 | novel | ||||||||
| seed | ---------------------------------------------------------------------------------------------UGACCUU--------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T5S1 | T5S2 | |||
| ----------------------------------------------------------------------------------ACCATATGATGTGACCTTACTCAG--------- | 24 | 6 | 8 | 8 | 3 | 34 | 24 | 1 | 15 | 8 | |
| ----------------------------------------------------------------------------------ACCATATGATGTGACCTTACTC----------- | 22 | - | - | 3 | 1 | 11 | 4 | - | 3 | 4 | |
| -----------------------------------------------------------------------------------CCATATGATGTGACCTTACTCAG--------- | 23 | - | - | - | 6 | 8 | 4 | - | 3 | 5 | |
| ----------------------------------------------------------------------------------ACCATATGATGTGACCTTAC------------- | 20 | 1 | 1 | 1 | 6 | 12 | 3 | - | - | 1 | |
| -----------------------------------------------------------------------------------CCATATGATGTGACCTTAC------------- | 19 | - | 2 | 1 | - | 3 | - | - | - | 2 | |
| -----------------------------------------------------------------------------------CCATATGATGTGACCTTACTC----------- | 21 | 2 | - | - | - | 3 | 1 | - | 1 | - | |
| ----------------------------------------------------------------------------------ACCATATGATGTGACCTT--------------- | 18 | - | - | 2 | - | 1 | 1 | - | - | 2 | |
| ----------------------------------------------------------------------------------ACCATATGATGTGACCTTA-------------- | 19 | - | - | - | - | 3 | 2 | - | 1 | - | |
| ----------------------------------------------------------------------------------ACCATATGATGTGACCTTACTCA---------- | 23 | - | 1 | - | - | 2 | - | - | 1 | - | |
| -----------------------------------------------------------------------------------CCATATGATGTGACCTTACTCA---------- | 22 | - | - | - | - | 1 | 2 | - | - | - | |
| ----------------------------------------------------------------------------------ACCATATGATGTGACCTTACT------------ | 21 | - | - | - | - | - | 1 | - | - | - | |
| --------------------------------------------------------------------------------------------GTGACCTTACTCAGCTGA----- | 18 | 1 | - | - | - | - | - | - | - | - | |
| rat | aggagttcaagtgagtgtgggtgacttgcagatgaattgaatagggctaagagctttggacattcctttcttcctcttggctACCATATGATGTGACCTTACTCAGctgatcacc | ||||||||||
| ******************************************************************************************************************* | |||||||||||
| >>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000012983 ENSRNOG00000009722 Chd3 | ||||||||||
| rat | .((...(((..((((((.((((.((...((.(((..........(((((((((....((.....)).......)))))))))..))).))..)).))))))))))..)))...)) | 0.900 -31.10 | |||||||||
| rat | chromosome:10:56143487:56143601:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000057058|ENSRNOG00000009722 ## Same_strand|Intronic_coding|ENSRNOT00000012983|ENSRNOG00000009722 ## ENSRNOG00000009722|protein_coding|Chd3|Chromodomain helicase DNA-binding protein 3 long isoform (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q2KMK7] |
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