miR-Intess: block249415

block249415_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block249415_cand 3arm	0	1	0	0	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block249415_cand 3arm	0	0.000	0	0	0	0	0	0	0	0

block249415 [novel_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.30/0.30	20/20/1.00	0.0	0.0	1	0	1	0	7	24	3arm	1	nd	0.15	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------------------AGUAGUA-------------------	1	novel
		len	cloning frequencies
			T1S2
	--------------------------------------------------------------------------------TAGTAGTAGTAGTAAATGTG-------	20	1
rat	tcatgtactactactactactactactactactactactactactactactactactactactattattattattagtagTAGTAGTAGTAGTAAATGTGtgcatga
	***********************************************************************************************************
	---------------------------------------------------------------------------------------------------------------------	ENSRNOT00000050329 ENSRNOG00000029556 RGD1559812_predicted
rat	((((((((.((...((((((((((((((((((((.((.((.((.((.((.((....)).)).)).)).)).)).))))))))))))))))))))...))))))))))	0.600 -38.50

rat

chromosome:13:29169897:29170003:-1

Opposite_strand|Intronic_non-coding|ENSRNOT00000050329|ENSRNOG00000029556 ## ENSRNOG00000029556|protein_coding|RGD1559812_predicted|similar to contactin associated protein-like 5 isoform 1 (predicted) (RGD1559812_predicted), mRNA [Source:RefSeq_dna;Acc:NM_001047865] ## {Repeats: trf 1 15 0 class=trf,dust 29169910 29169924 0 class=dust}

miR-Intess™

block249415_cand

block249415 [novel_randfoldOK]