miR-Intess: block24962

block24962_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block24962_cand 3arm	5	0	5	0	0	1	0	0	1	1
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block24962_cand 3arm	0.000	0	0.000	0	0	0.000	0	0	0.000	0.000

block24962 [novel_lenNOK_cloningOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.010	no	no	0.83/0.83	18/18/0.00	0.0	0.0	10	0	5	0	5	25	3arm	1	59	0.11	1	13	5	na	na

Families
Member of family novel8 (seed GGGGUGG): block24962_cand, block60051_cand, block518725_cand, block868622_cand, block940345_cand, block978353_cand, block1198539_cand, block2260096_cand, block2312308_cand

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------------------------GGGGUGG---------------	13	novel
		len	cloning frequencies
			T1S1	T2S1	T3S2	T5S1	T5S2
	-------------------------------------------------------------------------------------------------TGGGGTGGGGGGGGGTCC-----	18	5	5	1	1	1
rat	ctagaggaggcattgcccgcccttgaagaagccatgcgggtaccagaggctggcactagatggtgccaggagtggggatggggccagccttttgaccTGGGGTGGGGGGGGGTCCtctgg
	************************************************************************************************************************
	>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000045220 ENSRNOG00000021356 DLP2
	>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000029496 ENSRNOG00000021356 DLP2
	>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000031194 ENSRNOG00000021356 DLP2
	>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000047939 ENSRNOG00000021356 DLP2
	>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000048270 ENSRNOG00000021356 DLP2
	>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000045432 ENSRNOG00000021356 DLP2
rat	(((((((.......((((.(((((......(((...(((((...((((((((((.(((.......(((....)))...))).))))))))))..))))).)))))))).)))))))))))	0.760 -53.31

rat

chromosome:10:56244077:56244196:-1

Same_strand|Intronic_coding|ENSRNOT00000045432|ENSRNOG00000021356 ## ENSRNOG00000021356|protein_coding|DLP2|Dynein axonemal heavy chain-like protein (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q2KML4] ## {Repeats: dust 56244082 56244099 0 class=dust}

miR-Intess™

block24962_cand

block24962 [novel_lenNOK_cloningOK_randfoldOK]