Small RNA from different tissues of two rat strains.

miR-Intess™

miR classification

miR expression

block253476_cand

block253476_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block253476_cand 3arm	2	1	1	1	1	0	1	1	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block253476_cand 3arm	0.000	0.000	0.000	0.000	0.000	0	0.000	0.000	0	0

block253476_cand relative cloning frequencies

block253476 [novel_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.008	no	no	0.50/0.53	18/20/0.75	0.0	1.6	8	0	7	0	18	13	3arm	1	nd	0.30	3	8	7	na	na

Families
Member of family novel22 (seed GGCUCAU): block253476_cand, block314520_cand, block1606794_cand, block1702915_cand

block253476 hairpin

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------GGCUCAU------------------------------	8	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T4S1	T4S2
	-------------------------------------------------------------------------------TGGCTCATTTCAACAGGCCA------------------	20	1	1	1	1	1	1	-
	-------------------------------------------------------------------------------TGGCTCATTTCAACAGGCC-------------------	19	-	-	-	-	-	-	1
	-------------------------------------------------------------------------------TGGCTCATTTCAACAGGC--------------------	18	1	-	-	-	-	-	-
rat	gcgtctacgttccagttgatgtgatgtgtgtttatgaatgcttatgaaggatgcttatcaagttttagcatcctagaagTGGCTCATTTCAACAGGCCAtcagctgaagatgaagca
	*********************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000003527 ENSRNOG00000002595 Dpp10
rat	((.((....((.(((((((((....((.((((.((((.(((((....((((((((...........))))))))..)))))..))))...)))).))))))))))).))..)).)).	0.980 -36.20

rat

chromosome:13:36105881:36105997:-1

Same_strand|Intronic_coding|ENSRNOT00000003527|ENSRNOG00000002595 ## ENSRNOG00000002595|protein_coding|Dpp10|Inactive dipeptidyl peptidase 10 (Dipeptidyl peptidase X) (Kv4 potassium channel auxiliary subunit). [Source:UniProtKB/Swiss-Prot;Acc:Q6Q629]

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