block2539996_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block2539996_cand 3arm | 2 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block2539996_cand 3arm | 0.000 | 0.000 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0.000 | 0 |
block2539996 [novel_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.50/0.56 | 18/22/0.80 | 0.0 | 3.0 | 5 | 0 | 4 | 0 | 6 | 4 | 3arm | 1 | nd | 0.27 | 2 | 5 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------------CUUGGUG-------------------- | 5 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S1 | T5S1 | |||
| --------------------------------------------------CCTTGGTGGTCACAGACATAGT------ | 22 | - | 1 | 1 | 1 | |
| --------------------------------------------------CCTTGGTGGTCACAGACATAG------- | 21 | 1 | - | - | - | |
| --------------------------------------------------CCTTGGTGGTCACAGACA---------- | 18 | 1 | - | - | - | |
| rat | ctcccaggctgggtctctgacttccagagctgggtaaagcactaggccggCCTTGGTGGTCACAGACATAGTttgtga | |||||
| ****************************************************************************** | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000051155 ENSRNOG00000031479 Hdlbp | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000048834 ENSRNOG00000031479 Hdlbp | |||||
| rat | .((.(((((((.((((.((((..(((..(((((.............)))))..)))..)))).)))).))))))).)) | 0.920 -31.62 | ||||
| rat | chromosome:9:92722653:92722730:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000051155|ENSRNOG00000031479 ## ENSRNOG00000031479|protein_coding|Hdlbp|Vigilin (High density lipoprotein-binding protein) (HDL-binding protein). [Source:UniProtKB/Swiss-Prot;Acc:Q9Z1A6] |
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