logoSmall RNA from different tissues of two rat strains.


miR expression

block282646_cand

block282646_cand

Cloning frequencies
absoluteT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block282646_cand 5arm1000000000
normalizedT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block282646_cand 5arm0.000000000000
block282646_cand relative cloning frequencies

block282646 [novel_randfoldOK]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
no0.007nono0.48/0.4823/23/1.000.0
0.0
1
0
1
0
13
17
5arm
1
nd
0.17
2
11nana
block282646 hairpin
  readsmiRBase family seed
seed     --------------AGUGGUA-------------------------------------------------------------------------------------------------     1novel
  lencloning frequencies
   T1S1
      -------------GAGTGGTAATCCTGGCTAGTTCT----------------------------------------------------------------------------------     231
rat     atacgtgtgttggGAGTGGTAATCCTGGCTAGTTCTatcccatgtggcttgaaaagtatattcatgaggcaacttgggctcagaaagaccaaggatacacattcattctcatatgtgt      
      **********************************************************************************************************************      
 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ENSRNOT00000057283 ENSRNOG00000002627 NP_001100669.1
rat     (((((((((....(((((((.(((((((((..((((..((((.((.(((((((.......))))...))).)).))))...)))))).))).)))))).))))).....)))))))))     0.990 -36.60

ratchromosome:13:105168412:105168529:-1Same_strand|Boundary_non-coding|ENSRNOT00000003556|ENSRNOG00000002627 ## Same_strand|Intronic_non-coding|ENSRNOT00000057283|ENSRNOG00000002627 ## ENSRNOG00000002627|protein_coding|NP_001100669.1|potassium channel tetramerisation domain containing 3 [Source:RefSeq_peptide;Acc:NP_001100669]


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