Small RNA from different tissues of two rat strains.

miR-Intess™

miR classification

miR expression

block29776_cand

block29776_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block29776_cand 3arm	0	0	0	0	0	0	0	2	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block29776_cand 3arm	0	0	0	0	0	0	0	0.000	0	0

block29776_cand relative cloning frequencies

block29776 [novel_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.006	no	no	0.55/0.55	22/22/1.00	0.0	0.0	2	0	1	0	28	3	3arm	1	nd	0.18	1	2	1	na	na

Families
Member of family novel23 (seed CUCAGCA): sblock706_novel, block29776_cand, block1317251_cand, block97555_cand

block29776 hairpin

		reads	miRBase family seed
seed	-----------------------------------------------------------------CUCAGCA------------------------------------------	2	novel
		len	cloning frequencies
			T4S2
	----------------------------------------------------------------ACTCAGCAGAGTGTGTGCTCAG----------------------------	22	2
rat	ccagccaggctgagctgtaactggtactgaggcaggcgctgactgaatcgtgaagtccgaaatgACTCAGCAGAGTGTGTGCTCAGtgagcagacagtggcagcatcttttgga
	******************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000017218 ENSRNOG00000012818 NP_001101754.1
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000048407 ENSRNOG00000012818 NP_001101754.1
rat	((((....((((.(((((..(((.((((((((((.((.(((.((((.((((..........)))).))))))).)).))).)))))))..))))))))..)))).....)))).	0.980 -45.20

rat

chromosome:10:65243410:65243523:-1

Same_strand|Boundary_non-coding|ENSRNOT00000056163|ENSRNOG00000012818 ## Same_strand|Intronic_coding|ENSRNOT00000048407|ENSRNOG00000012818 ## ENSRNOG00000012818|protein_coding|NP_001101754.1|kinase suppressor of ras 1 [Source:RefSeq_peptide;Acc:NP_001101754]

©2008 InteRNA Genomics B.V.