block369055_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block369055_cand 5arm | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block369055_cand 5arm | 0 | 0 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
block369055 [novel_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.45/0.45 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 10 | 19 | 5arm | 1 | nd | 0.25 | 2 | 1 | 1 | na | na |
| Member of family novel28 (seed AAAGGUU): block65268_cand, block369055_cand, block1271678_cand, block2389578_cand |
| reads | miRBase family seed | ||
| seed | -----------AAAGGUU------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T2S1 | |||
| ----------TAAAGGTTTGTGTGGGTGGA------------------------------------------------------------------------------- | 20 | 1 | |
| rat | gagtccaggtTAAAGGTTTGTGTGGGTGGAagatggacagaggtgttagttgttttgtttaatttttgagacagggtctgtctatatagacctggctgtcctggagctc | ||
| ************************************************************************************************************* | |||
| ----------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000011043 ENSRNOG00000008276 NP_001100709.1 | ||
| rat | (((((((((....(((((((((((((..((...((..(((((((..(((.....)))....)))))))...))...))..)))))))))))))......)))))).))) | 0.410 -38.80 |
| rat | chromosome:14:87910781:87910889:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000011043|ENSRNOG00000008276 ## ENSRNOG00000008276|protein_coding|NP_001100709.1|adenylate cyclase 1 [Source:RefSeq_peptide;Acc:NP_001100709] |
©2008 InteRNA Genomics B.V.