logoSmall RNA from different tissues of two rat strains.


miR expression

block413685_cand

block413685_cand

Cloning frequencies
absoluteT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block413685_cand 3arm0000100000
normalizedT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block413685_cand 3arm00000.00000000
block413685_cand relative cloning frequencies

block413685 [novel_randfoldOK]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
no0.006nono0.67/0.6721/21/1.000.0
0.0
1
0
1
0
23
6
3arm
1
nd
0.19
2
11nana
block413685 hairpin
  readsmiRBase family seed
seed     ---------------------------------------------------------AGUCUGC------------------------------------     1novel
  lencloning frequencies
   T3S1
      --------------------------------------------------------TAGTCTGCCCTCACCCCCCAC-----------------------     211
rat     acgtggttgccggtgcctgtgagggtgggggctggcgagctggaactttgctatgcTAGTCTGCCCTCACCCCCCACaaccttctcatgggctcccagta      
      ****************************************************************************************************      
 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ENSRNOT00000008788 ENSRNOG00000006394 Tbc1d10a
 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ENSRNOT00000035591 ENSRNOG00000024390 Osm
rat     ((.(((..(((.(((..((((.((((((((((.(((.((((((.......))).))).))).))))))))))..)))).......))).)))..))))).     1.000 -45.60

ratchromosome:14:84858063:84858162:1Same_strand|Intronic_non-coding|ENSRNOT00000008788|ENSRNOG00000006394 ## Same_strand|Intronic_coding|ENSRNOT00000035591|ENSRNOG00000024390 ## ENSRNOG00000024390|protein_coding|Osm|oncostatin M [Source:RefSeq_peptide;Acc:NP_001006962] ## ENSRNOG00000006394|protein_coding|Tbc1d10a|TBC1 domain family, member 10a [Source:RefSeq_peptide;Acc:NP_001015022]


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