block42285_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block42285_cand 3arm | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block42285_cand 3arm | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.000 | 0 | 0 |
block42285 [novel_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.57/0.57 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 11 | 14 | 3arm | 1 | nd | 0.24 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------UGGUAGG------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T4S2 | |||
| -------------------------------------------------------------------ATGGTAGGTGGGAGGAGACAC----------- | 21 | 1 | |
| rat | TCATCCTAATGGCTGATCCCTGCTTCCTGTCTAATTATGGTGGGCATGAATACCAAGCACACTTTACATGGTAGGTGGGAGGAGACACAGCCCAGGAGA | ||
| mouse | ---------------ATCCCTGCTTCCTGTCTAGTTATGGTGAGCATGAATACCAAGCGCATGCTACGTGGTAGGTGGGAAGAGGCAC----------- | ||
| ****************** ******** *************** ** *** ************ *** *** | |||
| ------------------------------------------------------------------------------------------------------------- | ENSRNOT00000055238 ENSRNOG00000036814 Atp6v0a1 | ||
| ------------------------------------------------------------------------------------------------------------- | ENSRNOT00000055237 ENSRNOG00000036814 Atp6v0a1 | ||
| rat | ...((((...(((((.(((((.((.((((.(((.....((((.((.((.....)).)).)))).....))))))).)).))).))..))))).)))).. | 1.000 -33.60 | |
| mouse | ...(((.(((((..((((.(((((...((((((...........)))))).)))))))))..))))))))... | 0.999 -27.60 |
| rat | chromosome:10:90067952:90068050:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000055238|ENSRNOG00000036814 ## ENSRNOG00000036814|protein_coding|Atp6v0a1|ATPase, H+ transporting, lysosomal V0 subunit A1 Gene [Source:MGI (curated);Acc:Atp6v0a1-001] |
| mouse | chromosome:11:100919673:100919811:-1 | Opposite_strand|Intronic_coding|ENSMUST00000044721|ENSMUSG00000019302|protein_coding|ATPase, H+ transporting, lysosomal V0 subunit A1 Gene [Source:MGI (curated);Acc:Atp6v0a1-001] ## Opposite_strand|Boundary_non-coding|ENSMUST00000100436|ENSMUSG00000019302|protein_coding|ATPase, H+ transporting, lysosomal V0 subunit A1 Gene [Source:MGI (curated);Acc:Atp6v0a1-001] |
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