block43164_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block43164_cand 3arm | 4 | 2 | 0 | 0 | 1 | 0 | 1 | 1 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block43164_cand 3arm | 0.000 | 0.000 | 0 | 0 | 0.000 | 0 | 0.000 | 0.000 | 0 | 0 |
block43164 [novel_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.65/0.65 | 20/20/1.00 | 0.0 | 0.0 | 6 | 0 | 5 | 0 | 15 | 18 | 3arm | 1 | 0 | 0.15 | 2 | 9 | 5 | na | na |
| Member of family novel58 (seed GCCUGUC): block43164_cand, block1487475_cand |
| reads | miRBase family seed | ||||||
| seed | ---------------------------------------------------------------------GCCUGUC--------------------------- | 9 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S1 | T4S1 | T4S2 | |||
| --------------------------------------------------------------------CGCCTGTCCCTCTTGCGTAG--------------- | 20 | 4 | 2 | 1 | 1 | 1 | |
| rat | ggctcatacctcaacctgcccagggggcagagcttatgggagcaggctatgtctgctctccctgaaccCGCCTGTCCCTCTTGCGTAGgcaaacactggagct | ||||||
| ******************************************************************************************************* | |||||||
| ----------------------------------------------------------------------------------------------------------------- | ENSRNOT00000028375 ENSRNOG00000020902 G6pc3 | ||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000028381 ENSRNOG00000020905 Hdac5 | ||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000055188 ENSRNOG00000020905 Hdac5 | ||||||
| rat | (((((.........(((((.((((((((((.(((((.((((((((((...)))))))).)).)))....))))))))))..)).))))).........))))) | 0.990 -44.27 | |||||
| rat | chromosome:10:91266878:91266980:-1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000028375|ENSRNOG00000020902 ## Same_strand|Intronic_coding|ENSRNOT00000055188|ENSRNOG00000020905 ## Same_strand|Boundary_non-coding|ENSRNOT00000055187|ENSRNOG00000020905 ## ENSRNOG00000020905|protein_coding|Hdac5|Hdac5 protein (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q5RJZ2] ## ENSRNOG00000020902|protein_coding|G6pc3|glucose 6 phosphatase, catalytic, 3 [Source:RefSeq_peptide;Acc:NP_788266] |
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