Small RNA from different tissues of two rat strains.

miR-Intess™

miR classification

miR expression

block45598_cand

block45598_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block45598_cand 3arm	0	1	0	0	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block45598_cand 3arm	0	0.000	0	0	0	0	0	0	0	0

block45598_cand relative cloning frequencies

block45598 [novel_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.004	no	no	0.67/0.67	21/21/1.00	0.0	0.0	1	0	1	0	26	4	3arm	1	16	0.24	2	1	1	na	na

Families
Member of family novel95 (seed GCCAGCC): block45598_cand, block202681_cand

block45598 hairpin

		reads	miRBase family seed
seed	-----------------------------------------------------------------GCCAGCC---------------------------------------	1	novel
		len	cloning frequencies
			T1S2
	----------------------------------------------------------------TGCCAGCCCTCCAGCTCACCA--------------------------	21	1
rat	gccacaactgtccctttagggaacaatggttgagaggatgtgctgcaggacctagggaaactccTGCCAGCCCTCCAGCTCACCAtatcccttccccacagcctcgaggca
	***************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>	ENSRNOT00000017371 ENSRNOG00000012864 RGD1559716_predicted
rat	(((....((((......(((((...((((.((((.(((...((((((((.....((....))))))).)))..)))..)))))))).))))).....))))......))).	0.850 -38.70

rat

chromosome:10:95815230:95815340:-1

Same_strand|Intronic_coding|ENSRNOT00000017371|ENSRNOG00000012864 ## ENSRNOG00000012864|protein_coding|RGD1559716_predicted|

©2008 InteRNA Genomics B.V.