block492188_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block492188_cand 3arm | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block492188_cand 3arm | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
block492188 [novel_shortStem_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.57/0.57 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 3 | 20 | 3arm | 1 | 1 | 0.19 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------------------------CUUCAUU------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| ----------------------------------------------------------------------------------------------CCTTCATTCCCTTCCCCACCA------------------------ | 21 | 1 | |
| rat | CC------------------TTGGTTGTGGGGAAAAATAATGAATGTGTGCTTAGAGCAAGTCATGAACACATCCATTGTTGGTCTAACTGTACCCTTCATTCCCTTCCCCACCAGGA--------------------- | ||
| mouse | TCTTGTATTTGCCTTTGAGGTTGGTTGTAGAGGAAAGTAATGAATGTGGGCTTAGAGCA----ATGAACACATCCAGCCTTGCTCTAACTGTACTCTTCATTCCC-TCTCCACCAGAAAACTCTTGGAAGGCGAAGAGA | ||
| * ******** * * *** *********** ********** ************* *** *********** ********** ** ******* * | |||
| +++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>> >>>>> | ENSRNOT00000018599 ENSRNOG00000013658 Nefl | ||
| rat | .( (((((...((((((....((((((...(((((((((.(((...(((........)))..))).)))))..))))..))))))...)))))))))))). | 0.880 -30.00 | |
| mouse | ((((...((((((((((((.((((.((.(((((.....((((((.(((((.(((((((( (((........))...))))))))))).)))..)))))).)) ))).))))))....)))...))))))))))))) | 0.999 -39.60 |
| rat | chromosome:15:47638756:47638855:1 | Same_strand|Intronic_coding|ENSRNOT00000018599|ENSRNOG00000013658 ## ENSRNOG00000013658|protein_coding|Nefl|Neurofilament light polypeptide (NF-L) (Neurofilament triplet L protein) (68 kDa neurofilament protein). [Source:UniProtKB/Swiss-Prot;Acc:P19527] |
| mouse | chromosome:14:68704433:68704566:1 | Opposite_strand|Intronic_coding|ENSMUST00000111089|ENSMUSG00000022054|protein_coding|neurofilament, medium polypeptide Gene [Source:MGI (curated);Acc:Nefm-002] ## Opposite_strand|Boundary_non-coding|ENSMUST00000022638|ENSMUSG00000022054|protein_coding|neurofilament, medium polypeptide Gene [Source:MGI (curated);Acc:Nefm-002] ## Same_strand|Boundary_coding|ENSMUST00000022639|ENSMUSG00000022055|protein_coding|neurofilament, light polypeptide Gene [Source:MGI (curated);Acc:Nefl-001] |
©2008 InteRNA Genomics B.V.