Small RNA from different tissues of two rat strains.

miR-Intess™

miR classification

miR expression

block52216_cand

block52216_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block52216_cand 5arm	1	0	0	0	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block52216_cand 5arm	0.000	0	0	0	0	0	0	0	0	0

block52216_cand relative cloning frequencies

block52216 [novel_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.50/0.50	20/20/1.00	0.0	0.0	1	0	1	0	26	9	5arm	1	nd	0.30	3	1	1	na	na

Families
Member of family novel109 (seed CCACAGA): block52216_cand, block1549827_cand

block52216 hairpin

		reads	miRBase family seed
seed	---------------------------CCACAGA-----------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1
	--------------------------GCCACAGAAGGAAACAGGAA-----------------------------------------------------------	20	1
rat	gagaggtaatgcaaaaaggtcaggcaGCCACAGAAGGAAACAGGAAagggtcgtgcaagcccacctcccccctgtctccttgtggctgcatctaagtatgttctt
	*********************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000004524 ENSRNOG00000003386 D11Bwg0517e
rat	(((((...((((....((((...(((((((((..((((.(((((...(((..(((......)))..))).))))).)))))))))))))))))..)))).)))))	0.990 -41.40

rat

chromosome:10:108518224:108518328:-1

Same_strand|Intronic_non-coding|ENSRNOT00000004524|ENSRNOG00000003386 ## Same_strand|Boundary_non-coding|ENSRNOT00000006295|ENSRNOG00000003386 ## ENSRNOG00000003386|protein_coding|D11Bwg0517e|Fox-1 homolog C [Source:UniProtKB/Swiss-Prot;Acc:Q8BIF2]

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