logoSmall RNA from different tissues of two rat strains.


miR expression

block52990_cand

block52990_cand

Cloning frequencies
absoluteT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block52990_cand 5arm0000100000
normalizedT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block52990_cand 5arm00000.00000000
block52990_cand relative cloning frequencies

block52990 [novel_randfoldOK]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
no0.004nono0.60/0.6020/20/1.000.0
0.0
1
0
1
0
33
1
5arm
1
nd
0.20
2
11nana
block52990 hairpin
  readsmiRBase family seed
seed     ----------------------------------AGUCACU---------------------------------------------------------------------     1novel
  lencloning frequencies
   T3S1
      ---------------------------------TAGTCACTGACGGGGTGGAC---------------------------------------------------------     201
rat     ccccaccactgtggagctgtctggtcatggttcTAGTCACTGACGGGGTGGACctacttggctcctacctcttccctgcctgaaccagcctgcaccagttcccttgggga      
      **************************************************************************************************************      
 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ENSRNOT00000054970 ENSRNOG00000036697 Mafg
rat     (((((.......(((((((...(((..((((((.((.((..((.((((((((((.....)).))).))))).))..)).))))))))))).....)))))))..))))).     0.990 -43.60

ratchromosome:10:109930580:109930689:-1Same_strand|Intronic_non-coding|ENSRNOT00000054970|ENSRNOG00000036697 ## Same_strand|Boundary_non-coding|ENSRNOT00000051462|ENSRNOG00000036697 ## ENSRNOG00000036697|protein_coding|Mafg|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G [Source:RefSeq_peptide;Acc:NP_071781]


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