miR-Intess: block575958

block575958_cand

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.010	no	no	0.60/0.60	20/20/1.00	0.0	0.0	1	0	1	0	34	2	5arm	1	nd	0.25	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------CCGGACA------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T2S1
	----------------------------------TCCGGACAGGCAATGAAGGC------------------------------------------------------------------	20	1
rat	TGCTATCTGGCAGGCGATCCACCAACGTGGGACATCCGGACAGGCAATGAAGGCTCTCAGAGCGAAGGACATGTGCGAAGTCCGGGTGCACCACGTTGGGACCTGGGCCGAGACAGAGGT
mouse	------------------------ACGTGGGACATCCGGACAGGCGAAGAAGGTTCTCAGAGCAAAGGACACGTGCGAAGTCTGGGTGCTCCACGT------------------------
	********************* * *** ***** *** ****** ** ****
	----------------------------------------------------------------------------------------------------------------------------------	ENSRNOT00000035323 ENSRNOG00000022500 Rwdd4a
rat	.(((.((((...(((...((((((((((((..(((((((((..((((((...((((...))))......))).)))...)))))))))..)))))))))....))))))....)))))))	0.970 -51.70
mouse	((((((..(((((((((...((......(((((........))))).....))..)))))))))..))))))	0.993 -31.60

rat	chromosome:16:47946149:47946268:1	Opposite_strand\|Intronic_coding\|ENSRNOT00000035323\|ENSRNOG00000022500 ## ENSRNOG00000022500\|protein_coding\|Rwdd4a\|RWD domain-containing protein 4. [Source:UniProtKB/Swiss-Prot;Acc:Q569B7]
mouse	chromosome:8:48619342:48619413:-1	Opposite_strand\|Intronic_coding\|ENSMUST00000033973\|ENSMUSG00000031568\|protein_coding\|RWD domain containing 4A Gene [Source:MGI Symbol;Acc:MGI:2681000] ## {SimpF: oe = 1.03 -1 CpG}