miR-Intess: block5868

block5868_cand

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	27	6	3arm	1	2	0.30	2	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------------GAGGACC----------------------------------------	1	novel
		len	cloning frequencies
			T1S2
	-----------------------------------------------------------------------TGAGGACC-CTGTCTTCCTAC---------------------------	20	1
rat	TGGGTTAAATCCAGGGTGAGGTTTGTGGTAGCTGGGGAGCGTCAAGGTCCAGCAGAAT--GCTGGCTGCTCTGAGGACC-CTGTCTTCCTACAGTTCTTCCTTCGCCCTGGATTCCCAT
human	------------------------GAAGTAGC-----AGC----AGGTCCAGCAGGATGAGCTGATCACCGTGAGGACCTCTCTCCTCCCAC---------------------------
	* *** * ********* **** * ****** * **
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++ ++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	ENSRNOT00000004589 ENSRNOG00000003455 Zfp13
rat	((((...((((((((((((((.....((.((((((((((...((.((((((((((... .....)))))....))))) .))..))))).)))))))..)))))))))))))))))).	0.930 -54.20
human	..((.((. ((. ((((((.((.((.(((.....)))))))..)))))))))).)).....	0.489 -16.60

rat	chromosome:10:12851688:12851803:-1	Same_strand\|Intronic_coding\|ENSRNOT00000004589\|ENSRNOG00000003455 ## ENSRNOG00000003455\|protein_coding\|Zfp13\|zinc finger protein 13 Gene [Source:MGI Symbol;Acc:MGI:99159]
human	chromosome:16:3105719:3105874:1	Same_strand\|Boundary_coding\|ENST00000219091\|ENSG00000122386\|protein_coding\|Zinc finger protein 205 (Zinc finger protein 210) [Source:UniProtKB/Swiss-Prot;Acc:O95201]