logoSmall RNA from different tissues of two rat strains.


miR expression

block58718_cand

block58718_cand

Cloning frequencies
absoluteT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block58718_cand 5arm1000000000
normalizedT1S1T1S2T2S1T2S2T3S1T3S2T4S1T4S2T5S1T5S2
block58718_cand 5arm0.000000000000
block58718_cand relative cloning frequencies

block58718 [novel_randfoldOK]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
no0.001nono0.45/0.4520/20/1.000.0
0.0
1
0
1
0
6
28
5arm
1
nd
0.30
2
11nana
block58718 hairpin
  readsmiRBase family seed
seed     -------GGUGGUG------------------------------------------------------------------------------------------------     1novel
  lencloning frequencies
   T1S1
      ------AGGTGGTGTTGTGAAGGTTT------------------------------------------------------------------------------------     201
rat     gttgagAGGTGGTGTTGTGAAGGTTTtgtcttgtcttgtggtttgtagtaggggcggttttatgctatgagtagagtcctggacattgctcatgcagtgccaccctcagc      
      **************************************************************************************************************      
 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ENSRNOT00000049944 ENSRNOG00000005330 Crebbp
 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ENSRNOT00000007079 ENSRNOG00000005330 Crebbp
rat     ((((((.(((((..(((((..(((..(((((...(((...(((..(((((..((....))..)))))..))).)))....)))))..)))..)))))..)))))))))))     0.990 -41.60

ratchromosome:10:11703382:11703491:1Same_strand|Intronic_coding|ENSRNOT00000007079|ENSRNOG00000005330 ## ENSRNOG00000005330|protein_coding|Crebbp|CREB binding protein [Source:RefSeq_peptide;Acc:NP_596872]


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