Small RNA from different tissues of two rat strains.

miR-Intess™

miR classification

miR expression

block636598_cand

block636598_cand

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block636598_cand 5arm	0	0	0	0	0	0	0	0	0	0.500
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block636598_cand 5arm	0	0	0	0	0	0	0	0	0	0.000

block636598_cand relative cloning frequencies

block636598 [novel_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.004	no	no	0.30/0.30	20/20/1.00	0.0	0.0	1	0	1	0	20	12	5arm	2	nd	0.00	0	1	1	na	na

Families
Member of family novel119 (seed CAUUUUG): block322428_cand, block636598_cand

block636598 hairpin

		reads	miRBase family seed
seed	---------------------CAUUUUG---------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T5S2
	--------------------GCATTTTGTTTTCTTTTTGG---------------------------------------------------------------------------------	20	1
rat	CTGTAGATTTCTATACACAGGCATTTTGTTTTCTTTTTGGATGGTATGGTGAATAATCAGAATATGTTTTCAAA---ACTAGAAGACGAAGTGTCTATAACCTATGTGATAGCTGTTCAGG
mouse	------------------AGGCATTTTGTTTTCTTTTTGGATTGTATGGTTAATAATCAGAACATGTTTTCAAAACTACTAGAGGATGAATTGTCT-------------------------
	********************** *** ******* ******* ** * ***
rat	(((..(((..((((.((((((((((((((((((((((((((..((((..(((....)))..))))...)))))) )..)))))))))))))))).........)))))))..)))))).	0.950 -32.00
mouse	(((((.((..(((((((((((((.(((.((((.....))))..)))....))))))).....))))))..)).)))))	0.969 -17.60

rat	chromosome:17:93216118:93216235:-1	intergenic
mouse	chromosome:2:19056119:19056196:-1	intergenic

©2008 InteRNA Genomics B.V.