block652684_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block652684_cand 3arm | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block652684_cand 3arm | 0 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
block652684 [novel_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.67/0.67 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 9 | 5 | 3arm | 1 | nd | 0.19 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------GUCGGCU---------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S2 | |||
| ----------------------------------------------TGTCGGCTCCTTACCCCTCCC--------- | 21 | 1 | |
| rat | agccacgggtgggggtaaaggggcctagtgcagagggcctagctgcTGTCGGCTCCTTACCCCTCCCacagtgctc | ||
| **************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000060403 ENSRNOG00000014481 RGD1305679 | ||
| rat | ((.(((.((..(((((.((((((((....((((..(((...))).)))).)))))))))))))..))...))))). | 1.000 -37.10 |
| rat | chromosome:17:28842367:28842442:1 | Same_strand|Boundary_non-coding|ENSRNOT00000019478|ENSRNOG00000014481 ## Same_strand|Intronic_coding|ENSRNOT00000060403|ENSRNOG00000014481 ## ENSRNOG00000014481|protein_coding|RGD1305679|Uncharacterized protein C6orf105 homolog (Liver regeneration-related protein LRRG140). [Source:UniProtKB/Swiss-Prot;Acc:Q5M828] |
©2008 InteRNA Genomics B.V.